Code
#!/usr/bin/env python3
import os
import re
import sys
print(sys.executable)
print(sys.path)
print(sys.version)
import collections
import argparse
import tables
import itertools
import matplotlib
import glob
import math
%matplotlib inline
import scipy.io
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
import numpy as np
import pandas as pd
import scipy
import scipy.stats as stats
import scipy.sparse as sp_sparse
import scanpy as sc
import scanpy.external as sce
from collections import defaultdict
from scipy import sparse, io
import scanpy.external as sce
import matplotlib
from scipy.sparse import csr_matrix
from multiprocessing import Pool
#from matplotlib_venn import venn2, venn2_circles
matplotlib.rcParams['pdf.fonttype'] = 42
matplotlib.rcParams['ps.fonttype'] = 42
print('numpy', np.__version__)
print('pandas', pd.__version__)
print('scipy', scipy.__version__)
print('matplotlib', matplotlib.__version__)
!date +%F/home2/s426305/.conda/envs/py36/bin/python
['', '/cm/shared/apps/cnvkit/0.9.5/lib/python3.6/site-packages', '/cm/shared/apps/python/3.6.4-anaconda/lib', '/cm/shared/apps/jupyterkernel-matlab/0.16.1/lib/python3.6/site-packages', '/home2/s426305/.conda/envs/py36/lib/python36.zip', '/home2/s426305/.conda/envs/py36/lib/python3.6', '/home2/s426305/.conda/envs/py36/lib/python3.6/lib-dynload', '/home2/s426305/.local/lib/python3.6/site-packages', '/home2/s426305/.conda/envs/py36/lib/python3.6/site-packages', '/home2/s426305/.conda/envs/py36/lib/python3.6/site-packages/IPython/extensions', '/home2/s426305/.ipython']
3.6.7 | packaged by conda-forge | (default, Jul 2 2019, 02:18:42)
[GCC 7.3.0]
numpy 1.16.1
pandas 0.25.1
scipy 1.1.0
matplotlib 3.3.3
2021-10-12